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IO Functions

# NextGenSeqUtils.read_fasta — Function.

read_fasta(filename; seqtype=String)

Read .fasta file contents, parse, and return sequences as type seqtype

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# NextGenSeqUtils.read_fasta_with_names — Function.

read_fasta_with_names(filename; seqtype=String)

Read .fasta file contents, parse, and return names and sequences as type seqtype.

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# NextGenSeqUtils.read_fasta_with_names_in_other_order — Function.

read_fasta_with_names_in_other_order(filename; seqtype=String)

Read .fasta file contents, parse, and return sequences as type seqtype with names. Now that's what I call convenience.

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# NextGenSeqUtils.write_fasta — Function.

write_fasta(filename::String, seqs; names = String[])

Write given seqs and optional names to a .fasta file with given filepath.

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# NextGenSeqUtils.read_fastq — Function.

read_fastq(filename; seqtype=String)

Read .fastq file contents, parse, and return sequences as seqtype type, phreds, and names.

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# NextGenSeqUtils.write_fastq — Function.

write_fastq(filename, seqs, phreds::Vector{Vector{Phred}};
                 names=String[], DNASeqType = false)

Write given sequences, phreds, names to .fastq file with given file path. If names not provided, gives names 'seq_1', etc.

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