ProtPlot

animate_molecule_dir(export_path, input_dirs; kwargs...)

Reads all .xyz files in each input directory and animates them using animate_molecules.

animate_molecules(export_path, molecules_cache; kwargs...)

Keyword arguments:

• labels: A vector of labels for each molecule series.
• frame_names: A vector of vectors of frame names for each molecule series.
• rotation = 0.02: The rotation speed.
• extra_seconds = 5: The number of seconds to show the extra frames after the animation.
• end_rotation_speedup = 0.5: The end rotation speedup.
• size = (1280, 720): The size of the figure.
• framerate = 60: The framerate of the animation.
• duration = 10.0: The duration of the animation.
• theme = :black: The theme of the animation.

animate_trajectory_dir(export_path, input_dirs; kwargs...)

Keyword arguments:

• labels: A vector of labels for each input directory.
• color_by: aa for amino acid color, chain for chain color, numbering for numbering color.
• aa_colormap: A colormap for structures colored by amino acid.
• chain_colormap: A colormap for structures colored by chain.
• numbering_colormap: A colormap for structures colored by numbering.
• rotation = 0.02: The rotation speed.
• framerate = 24: The framerate of the animation.
• end_rotation_speedup = 0.0: Additive end rotation speed.
• end_ribbon_seconds = 3.0: The number of seconds to show the ribbon after the animation.
• size: The size of the figure.

ribbon_scene(chain_backbones::AbstractVector{<:AbstractArray{T,3}}; backgroundcolor=:black, camcontrols=(;), kwargs...)

Render a protein as a ribbon diagram. The display will be automatically centered on the rendered ribbon, unless the user supplies camcontrols (see Makie's camera documentation for details).