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Rifraf.jl

A Julia package for the RIFRAF sequence consensus algorithm.

RIFRAF is a DNA consensus algorithm that is extremely accurate even for a small number of sequences. It uses quality scores and optionally takes a reference sequence for frame correction.

Examples

• Examples

API

• API

Citing RIFRAF

This method has been submitted for publication. A link to the journal article will be added here when it is available.

Index

• Rifraf.ErrorModel
• Rifraf.RifrafParams
• Rifraf.RifrafResult
• Rifraf.Scores
• Rifraf.read_fasta
• Rifraf.read_fasta_records
• Rifraf.read_fastq
• Rifraf.read_fastq_records
• Rifraf.read_samples
• Rifraf.rifraf
• Rifraf.sample_sequences
• Rifraf.write_fasta
• Rifraf.write_fastq
• Rifraf.write_samples